Manatee Access Our databases are "bmqc" (QMB1551) and "bm319c" (DSM319)
The SEED annotation/analysis tool at NIU FIG annotation tools. You need a DIFFERENT password for this page!
Sequence Utilities page: BLAST search, downloading sub-sequences, translation. You need a password for these functions for the present.
Annotation and Gene Names page: Search annotations from TIGR and RAST for common words. Also, find the RAST or TIGR names that correspond to each other. You need a password for these functions for the present.
Comparison between TIGR and RAST annotations: images of 100,000 bp segments of the chromosome with gene names and IDs
Most closely related species for each gene Also has GC content and dicleotide composition for each 100 bp region. And, comparison between TIGR and RAST annotations: images of 100,000 bp segments of the chromosome with gene names and IDs
Repeat Sequence images of the B. megaterium chromosome and plasmids (blast dotplots).
Larger scale repeat images, plus links to images for several other Bacillus species
Genome Images of the B. megaterium chromosome and plasmids. All the genes on one image.
NCBI sites for structural RNA genes from Bacillus and related genomes.
Annotation Control My personal set of links to many useful external sites
KEGG enzymes and pathways
NCBI PubMed, on-line BLAST, databases, etc.
Main B. meg home page at NIU
| Major Category | Finished | Started | Untouched |
|---|---|---|---|
| Unclassified | 638 | 2 | 0 |
| Amino acid biosynthesis | 94 | 0 | 0 |
| Purines, pyrimidines, nucleosides, and nucleotides | 47 | 0 | 0 |
| Fatty acid and phospholipid metabolism | 79 | 0 | 0 |
| Biosynthesis of cofactors, prosthetic groups, and carriers | 141 | 0 | 0 |
| Central intermediary metabolism | 137 | 0 | 0 |
| Energy metabolism | 406 | 0 | 0 |
| Transport and binding proteins | 442 | 2 | 0 |
| DNA metabolism | 97 | 1 | 0 |
| Transcription | 67 | 1 | 0 |
| Protein synthesis | 95 | 1 | 0 |
| Protein fate | 138 | 1 | 0 |
| Regulatory functions | 287 | 0 | 0 |
| Signal transduction | 100 | 0 | 0 |
| Cell envelope | 260 | 0 | 0 |
| Cellular processes | 413 | 2 | 0 |
| Mobile and extrachromosomal element functions | 27 | 3 | 0 |
| Unknown function | 475 | 0 | 0 |
| Conserved hypothetical proteins | 886 | 11 | 0 |
| Hypothetical | 835 | 1 | 0 |
| Disrupted reading frame | 0 | 44 | 0 |
| Glimmer rejects | 0 | 0 | 0 |
| TOTAL | 5664 | 69 | 0 |
| Molecule | Finished | Started | Untouched |
|---|---|---|---|
| chromosome | 5172 | 41 | 0 |
| pBM100 | 8 | 1 | 0 |
| pBM200 | 13 | 0 | 0 |
| pBM300 | 38 | 0 | 0 |
| pBM400 | 72 | 8 | 0 |
| pBM500 | 92 | 2 | 0 |
| pBM600 | 103 | 7 | 0 |
| pBM700 | 166 | 10 | 0 |
| ID | Genes annotated |
|---|---|
| hypothetical gene | 836 |
| cbraun | 474 |
| cckirche | 34 |
| cglavin | 59 |
| dquinlan | 56 |
| jedirisi | 130 |
| jhintzsc | 34 |
| jraskows | 55 |
| jravel | 2 |
| jregistr | 35 |
| kharmata | 55 |
| kkutumba | 247 |
| ljiang | 21 |
| mduvall | 16 |
| meppinge | 29 |
| mjohns | 2132 |
| mturner | 34 |
| pvary | 866 |
| rosovitz | 2 |
| sdaugher | 1 |
| sdingha | 252 |
| sgc | 2 |
| skoenig | 109 |
| ttice | 98 |
| wgraybur | 138 |
| { none } | 16 |